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--- discord [2018/06/28 23:29] – chris
+++ discord [2018/07/04 07:22] (current) – chris
@@ Line 1: / Line 1: @@
 ===== Expression vs. repression discordance =====
-Paper: Cell identity genes are predicted by the absence of broad H3K27me3 domains. Shim et al. 2018. (in prep.).
+An example Python source code to calculate the discordance score is provided {{ :research:discordance.zip |here}}
+'discordance.py' can be run with a command line tool.
-An example Python source code to calculate the discordance score is provided {{ :research:discordance.zip |here}}
+e.g. >>> python discordance.py -i example_input.txt -o output.txt -s hg19
-'discordant.py' can be run with a command line tool.
+'repressive_hg19.txt' and 'repressive_mm10.txt' are repressive tendency score tables for human and mouse respectively.
-e.g. >>> python discordant.py -i example_input.txt -o output.txt -s hg19
+More details are included in 'discordance.py'.
-'latency_hg19.txt' and 'latency_mm10.txt' are latency score tables for human and mouse respectively.
+Please report any issues related to the code to w.shim@uq.edu.au.
-More details are included in 'discordant.py'.
+For citation, Shim, WJ., Piper, M., Palpant, N., Boden, M. (2018) Cell identity genes are predicted by the absence of broad H3K27me3 domains. //in revision//
-Please report any issues related to the code to w.shim@uq.edu.au.