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strviper [2017/05/03 14:31] – mikael | strviper [2018/03/20 09:19] – mikael | ||
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STRViper is written in Java and hence can be run cross platforms. We provided scripts for conveniently running STRViper on Unix, Linux and MacOS and scripts for Windows are under development. | STRViper is written in Java and hence can be run cross platforms. We provided scripts for conveniently running STRViper on Unix, Linux and MacOS and scripts for Windows are under development. | ||
- | A manuscript describing STRViper is currently under review for submission. | + | |
+ | If you are interested in knowing more about STRViper, please contact Minh Duc Cao (minhduc.cao@gmail.com). If you find STRViper useful for your research, please cite it in your publications. | ||
+ | |||
+ | Cao MD, Tasker E, Willadsen K, Imelfort M, Vishwanathan S, Sureshkumar S, Balasubramanian S and Bodén M (2014) Inferring Short Tandem Repeat Variation from Paired-End Short Reads, //Nucleic Acids Research//. Feb; | ||
=== Installation === | === Installation === | ||
- | Download the strviper package. | + | 1. Download the strviper package: http:// |
- | Unzip the package to $PATH_TO_STRV (i.e., tar zxvf strviper.tar.gz) | + | |
- | Add $PATH_TO_STRV/ | + | |
=== Making Variations Calls === | === Making Variations Calls === |