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   - Hawkins J, Mahony D, Maetschke S, Wakabayashi M, Teasdale RD and Bodén M (2007) Identifying novel peroxisomal proteins. //Proteins// 69(3): 606-616.   - Hawkins J, Mahony D, Maetschke S, Wakabayashi M, Teasdale RD and Bodén M (2007) Identifying novel peroxisomal proteins. //Proteins// 69(3): 606-616.
   - Hawkins J, Davis L and Bodén M (2007) //Predicting nuclear localization//. J Proteome Res 6(4): 1402-1409.   - Hawkins J, Davis L and Bodén M (2007) //Predicting nuclear localization//. J Proteome Res 6(4): 1402-1409.
-  - Bauer, D., Bodén M., Thier, R. and Gillam, E. M. STAR: Predicting recombination sites from amino acid sequence. //BMC Bioinformatics//, 7:437, 2006. (Open access.) +  - Bauer D, Bodén M, Thier R and Gillam EM. STAR: Predicting recombination sites from amino acid sequence. //BMC Bioinformatics//, 7:437, 2006. (Open access.) 
-  - Bodén, M. and Bailey, T. L. Identifying sequence regions undergoing conformational change via predicted continuum secondary structure. //Bioinformatics//. 22(15): 1809-1814, 2006. (Open access.) +  - Bodén M and Bailey TL. Identifying sequence regions undergoing conformational change via predicted continuum secondary structure. //Bioinformatics//. 22(15): 1809-1814, 2006. (Open access.) 
-  - Bodén, M., Yuan, Z. and Bailey, T. L. Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures. //BMC Bioinformatics//. 7:68, 2006. (Open access.) +  - Bodén M, Yuan Z and Bailey TL. Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures. //BMC Bioinformatics//. 7:68, 2006. (Open access.) 
-  - Yuan, Z., Zhang, F., Davis, M. J., Bodén  M. and Teasdale, R. D. Predicting the solvent accessibility of transmembrane residues from protein sequence. //Journal of Proteome Research//. 5(5):1063-1070, 2006. +  - Yuan Z, Zhang F, Davis MJ, Bodén M and Teasdale RD. Predicting the solvent accessibility of transmembrane residues from protein sequence. //Journal of Proteome Research//. 5(5):1063-1070, 2006. 
-  - Hawkins, J. and Bodén  M. Detecting and sorting targeting peptides with recurrent networks and support vector machines. //Journal of Bioinformatics and Computational Biology//, 4(1), 2006. +  - Hawkins J and Bodén M. Detecting and sorting targeting peptides with recurrent networks and support vector machines. //Journal of Bioinformatics and Computational Biology//, 4(1), 2006. 
-  - Bodén, M. and Hawkins, J. Prediction of subcellular localisation using sequence-biased recurrent networks. //Bioinformatics//. 21(10):2279-2286, 2005. +  - Bodén M and Hawkins J. Prediction of subcellular localisation using sequence-biased recurrent networks. //Bioinformatics//. 21(10):2279-2286, 2005. 
-  - Hawkins, J. and Bodén  M. The applicability of recurrent neural networks for biological sequence analysis. //IEEE/ACM Transactions on Computational Biology and Bioinformatics//, 2(3): 243-253, 2005. +  - Hawkins J and Bodén M. The applicability of recurrent neural networks for biological sequence analysis. //IEEE/ACM Transactions on Computational Biology and Bioinformatics//, 2(3): 243-253, 2005. 
-  - Bodén, M. and Hawkins, J. Improved access to sequential motifs: A note on the architectural bias of recurrent networks. //IEEE Transactions on Neural Networks//. 16(2), 2005. +  - Bodén M and Hawkins J. Improved access to sequential motifs: A note on the architectural bias of recurrent networks. //IEEE Transactions on Neural Networks//. 16(2), 2005. 
-  - Bodén, M. //Generalization by symbolic abstraction in cascaded recurrent networks, Neurocomputing//, 57, pp. 87-104, 2004. +  - Bodén M. //Generalization by symbolic abstraction in cascaded recurrent networks, Neurocomputing//, 57, pp. 87-104, 2004. 
-  - Bodén, M. and Blair, A. Learning the dynamics of embedded clauses, Applied Intelligence: //Special issue on natural language and machine learning//, 19(1/2), pp. 51-63, 2003. +  - Bodén M and Blair A. Learning the dynamics of embedded clauses, Applied Intelligence: //Special issue on natural language and machine learning//, 19(1/2), pp. 51-63, 2003. 
-  - Bodén, M. and Wiles, J. On learning context free and context sensitive languages, //IEEE Transactions on Neural Networks//. 13(2), pp. 491-493, 2002. +  - Bodén M and Wiles J. On learning context free and context sensitive languages, //IEEE Transactions on Neural Networks//. 13(2), pp. 491-493, 2002. 
-  - Bodén, M. and Wiles, J., Context-free and context-sensitive dynamics in recurrent neural networks, //Connection Science//, 12 (3/4), pp. 197-210, 2000. +  - Bodén M and Wiles J. Context-free and context-sensitive dynamics in recurrent neural networks, //Connection Science//, 12 (3/4), pp. 197-210, 2000. 
-  - Bodén, M. and Niklasson, L., Semantic systematicity and context in connectionist Networks, //Connection Science//, 12 (2), pp. 111-142, 2000.+  - Bodén M and Niklasson L. Semantic systematicity and context in connectionist Networks, //Connection Science//, 12 (2), pp. 111-142, 2000.
  
 ==== Refereed conference papers (since 2000) ==== ==== Refereed conference papers (since 2000) ====
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