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   - Rieger WJF, Bodén M, Arnold FA and Mora A. Squidly: Enzyme Catalytic Residue Prediction Harnessing a Biology-Informed Contrastive Learning Framework. Accepted //eLife//. DOI [[https://doi.org/10.7554/eLife.108186.1|10.7554/eLife.108186.1]]   - Rieger WJF, Bodén M, Arnold FA and Mora A. Squidly: Enzyme Catalytic Residue Prediction Harnessing a Biology-Informed Contrastive Learning Framework. Accepted //eLife//. DOI [[https://doi.org/10.7554/eLife.108186.1|10.7554/eLife.108186.1]]
   - Thompson R et al. Thermostable ancestors enabled evolutionary diversification of promiscuous chemical defence enzymes. Accepted The EMBO Journal.   - Thompson R et al. Thermostable ancestors enabled evolutionary diversification of promiscuous chemical defence enzymes. Accepted The EMBO Journal.
-  - Chen R, Foley G and Bodén M. (2025) Learning the Language of Phylogeny with MSA Transformer. //Cell Systems// 16. DOI [[https://doi.org/10.1101/2024.12.18.629037|10.1101/2024.12.18.629037]] [[https://www.biorxiv.org/content/10.1101/2024.12.18.629037v1|bioRxiv]]+  - Chen R, Foley G and Bodén M. (2025) Learning the Language of Phylogeny with MSA Transformer. //Cell Systems// 16. DOI [[https://doi.org/10.1016/j.cels.2025.101445|10.1016/j.cels.2025.101445]] [[https://www.biorxiv.org/content/10.1101/2024.12.18.629037v1|bioRxiv]]
   - Sinniah E et al. Epigenetic constraint of cellular genomes evolutionarily links genetic variation to function. Accepted //Nucleic Acids Research//. [[https://doi.org/10.1101/2024.10.28.620690|https://doi.org/10.1101/2024.10.28.620690]]   - Sinniah E et al. Epigenetic constraint of cellular genomes evolutionarily links genetic variation to function. Accepted //Nucleic Acids Research//. [[https://doi.org/10.1101/2024.10.28.620690|https://doi.org/10.1101/2024.10.28.620690]]
   - Low YS, Roche SG, Aleksandrova NA, Foley G, Low JKK, Box JK, Croll TI, Chassagnon IR, Lott JS, Deplazes E, Bodén M, Hurst MRH, Piper SJ and Landsberg MJ. Complete structures of the YenTc holotoxin prepore and pore reveal the evolutionary basis for chitinase incorporation into ABC toxins. Accepted //Nature Communications//.   - Low YS, Roche SG, Aleksandrova NA, Foley G, Low JKK, Box JK, Croll TI, Chassagnon IR, Lott JS, Deplazes E, Bodén M, Hurst MRH, Piper SJ and Landsberg MJ. Complete structures of the YenTc holotoxin prepore and pore reveal the evolutionary basis for chitinase incorporation into ABC toxins. Accepted //Nature Communications//.
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  • Last modified: 2025/11/11 16:29
  • by mikael