We're a bioinformatics group at the University of Queensland, Australia. Our research aims to develop, investigate and apply bioinformatics methodologies to understand and resolve a range of open problems in genomics, molecular and systems biology. Recent applications involve protein sorting, nuclear protein organisation, mechanisms of transcriptional regulation, sequence and structure determinants of protein function and modification, and protein engineering. See here for a list of publications from our group.
If you have any questions or feedback, we'd love to hear them. Please ensure that you provide a valid email address if you would like us to respond to any questions/queries. If you do provde an email address, you will be automatically cc'd on to the email.
If you find PhosphoPICK useful in your research please cite one of the following papers:
- Patrick R, Horin C, Kobe B, Le Cao KA and Bodén M (2016) Prediction of kinase-specific phosphorylation sites through an integrative model of protein context and sequence. BBA - Proteins and Proteomics. 1864(11):1599-608. DOI: 10.1016/j.bbapap.2016.08.001. [Pubmed Abstract].
- Patrick R, Kobe B, Le Cao KA and Bodén M (2017) PhosphoPICK-SNP: Quantifying the effect of amino acid variants on protein phosphory lation, Bioinformatics. DOI: 10.1093/bioinformatics/btx072. [PubMed Abstract].
- Patrick R, Le Cao KA, Kobe B and Bodén M (2015) PhosphoPICK: Modelling cellular context to map kinase-substrate phosphorylation eve nts. Bioinformatics. 31(3):382-389. DOI: 10.1093/bioinformatics/btu663. [Pubmed Abstract].
The PhosphoPICK web-server is greatly advanced by the availability of several free packages and libraries:
- The Django web-development library.
- Django Tables 2.