open_projects
Differences
This shows you the differences between two versions of the page.
| Both sides previous revisionPrevious revision | |||
| open_projects [2026/08/07 09:57] – remove Michael Hall's project project | open_projects [2026/08/07 09:58] (current) – update Michael Hall email project | ||
|---|---|---|---|
| Line 81: | Line 81: | ||
| === Pangenomes to predict bacterial transmission in healthcare settings === | === Pangenomes to predict bacterial transmission in healthcare settings === | ||
| - | Contacts: Leah Roberts l.roberts3@uq.edu.au, | + | Contacts: Leah Roberts l.roberts3@uq.edu.au, |
| Predicting whether two bacterial isolates are the same (and thereby inferring if transmission has occurred) has traditionally been performed by identifying and counting single nucleotide variants (SNVs). To do this, a reference genome is usually selected, and isolate reads are mapped to the reference to identify SNVs in regions shared between all isolates. However, for large datasets of very diverse bacterial strains, a single reference genome is usually insufficient, | Predicting whether two bacterial isolates are the same (and thereby inferring if transmission has occurred) has traditionally been performed by identifying and counting single nucleotide variants (SNVs). To do this, a reference genome is usually selected, and isolate reads are mapped to the reference to identify SNVs in regions shared between all isolates. However, for large datasets of very diverse bacterial strains, a single reference genome is usually insufficient, | ||
open_projects.txt · Last modified: 2026/08/07 09:58 by project